PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G24040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 360aa    MW: 41065 Da    PI: 9.173
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G24040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.9e-31959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  ORUFI08G24040.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                     79***********************************************96 PP

2K-box84.32.5e-28841828100
            K-box   8 sleeakaeslqqelakLkkeienLqreqRhl......lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                      + e+++ + +++e+ kLk+++enLqr+qRhl      lGedL+sL +keL++Le+qL++slk++R++++++l++ + elq++e++++e+n++Lr
  ORUFI08G24040.1  84 NRESEQLKASRNEYLKLKARVENLQRTQRHLiawinlLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDRLTELQRREQMVSEANRCLR 177
                      467888999********************853333338******************************************************** PP

            K-box  96 kklee 100
                      +klee
  ORUFI08G24040.1 178 RKLEE 182
                      **987 PP

3K-box37.79e-142322653669
            K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                       +llGedL+sL +keL++Le+qL++slk++R+++
  ORUFI08G24040.1 232 GNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTR 265
                      49*****************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.389161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
CDDcd002656.86E-43277No hitNo description
SuperFamilySSF554551.19E-33289IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-323859IPR002100Transcription factor, MADS-box
PfamPF014865.7E-2186180IPR002487Transcription factor, K-box
PROSITE profilePS5129714.24890186IPR002487Transcription factor, K-box
PROSITE profilePS512976.781210318IPR002487Transcription factor, K-box
PfamPF014861.6E-9233273IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
QSMTKTLEKY QKCSYAGPET AVQNRESEQL KASRNEYLKL KARVENLQRT QRHLIAWINL  120
LGEDLDSLGI KELESLEKQL DSSLKHVRTT RTKHLVDRLT ELQRREQMVS EANRCLRRKL  180
EESNHVRGQQ VWEQGCNLIG YERQPEVQQP LHGGNGFFHP LDAAGEPTLQ IGNLLGEDLD  240
SLGIKELESL EKQLDSSLKH VRTTRWILNS DETSRRPRSP ATLPPPVPTP LHDRAAAQQQ  300
QQQLARRGDG EMEMVPLLLL PSTTFLFFEN GFPHHHIIIL ASSTVLALLL VVLVLSSSPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_D2e-24751801101Developmental protein SEPALLATA 3
4ox0_C2e-24751801101Developmental protein SEPALLATA 3
4ox0_B2e-24751801101Developmental protein SEPALLATA 3
4ox0_A2e-24751801101Developmental protein SEPALLATA 3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5519210.0AY551921.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS216 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648762.11e-160PREDICTED: MADS-box transcription factor 7 isoform X2
SwissprotP0C5B01e-162MADS7_ORYSI; MADS-box transcription factor 7
SwissprotQ0J4661e-162MADS7_ORYSJ; MADS-box transcription factor 7
TrEMBLA0A0E0QLL90.0A0A0E0QLL9_ORYRU; Uncharacterized protein
STRINGBGIOSGA029052-PA1e-159(Oryza sativa Indica Group)
STRINGORGLA08G0230000.11e-159(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.15e-82MIKC_MADS family protein